9/12/2023 0 Comments Conda install r![]() I should admit that the biggest problem for me was probably hdf5r, which is more obscure, so fewer combinations are possible. After a few, it wanted me to downgrade to R 3.3. You can install individual R packages as conda packages, but if you have several, you quickly run into dependency problems. ![]() I couldn't even install some mainstream packages like tidyverse. Unfortunately, I quickly ran into problems with packages like rJava and rlang which had external dependencies. My original plan was to use r-base and just install all the packages normally (via install.packages() or biocLite().It also splits the entire community, since different conda packages depend on different R flavors. When R is available, it can be either the standard version or the Microsoft R.This is not a problem for most packages, but the latest version of Bioconductor needs the latest version of R. The most obvious is that R 3.5 is still not available (after 3 months) on either conda-forge or r channels.Unfortunately, I keep running into problems with R. It seemed like a great use-case for conda. I recently needed to use an R package that had python-based dependencies. ![]() Everything python-based worked for me, which makes sense considering it was developed by python users. I recently started using conda, which has been working well for specific tools. Not having root permissions makes some things difficult. ![]()
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